REFERENCES

Main article

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

R. Lavery, M. Moakher, J.H. Maddocks, D. Petkeviciute, K. Zakrzewska

Nucleic Acids Res 2009, 37:5917-5929


Ion/solvent analysis

Analyzing ion distributions around DNA

R. Lavery, J.H. Maddocks, M. Pasi, K. Zakrzewska

Nucleic Acids Res. 2014, 42:8138-8149


Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA

P.D. Dans, I. Faustino, F. Battistini, K. Zakrzewska, R. Lavery, M. Orozco

Nucleic Acids Res. 2014, 42:11304-11320


Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics

M. Pasi, J.H. Maddocks, R. Lavery

Nucleic Acids Res. 2015


Web-server for single structure analyses

CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures

C. Blanchet, M. Pasi, K. Zakrzewska, R. Lavery

Nucleic Acids Res 2011, 39:W68-W73


Sample publications using Curves+

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

R. Lavery, K. Zakrzewska, D. Beveridge, T.C. Bishop, D.A.Case, T. Cheatham, S. Dixit, B. Jayaram, F. Lankas, C. Laughton, J.H. Maddocks, A. Michon, R. Osman, M. Orozco, A. Perez, T. Singh, N. Spackova, J. Sponer

Nucleic Acids Res 2010, 38:299-313


μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

M. Pasi, J.H. Maddocks, D. Beveridge, T.C. Bishop, D.A. Case, T. Cheatham III, P.D. Dans, B. Jayaram, F. Lankas, C. Laughton, J. Mitchell, R. Osman, M. Orozco, A. Pérez, D. petkeviciute, N. Spackova, J. Sponer, K. Zakrzewska, R. Lavery

Nucleic Acids Res. 2014, 42:12272-12283